#!/usr/bin/python3

import argparse

parser = argparse.ArgumentParser(
    description = 'Trims any Ns off each sequence in a fasta/q file. Does nothing to gaps in the middle, just trims the ends',
    usage = '%(prog)s [options] <fasta/q in> <fasta/q out>')
parser.add_argument('infile', help='Name of input fasta/q file')
parser.add_argument('outfile', help='Name of output fasta/q file')
options = parser.parse_args()


from fastaq import tasks

tasks.trim_Ns_at_end(options.infile, options.outfile)
